Cross-registration

cross-registration.ipynb aligns and matches cells across multiple recording sessions of the same animal, producing a cell-to-cell mapping table.

Running this notebook

Copy the notebook out of the installed package and open it with Jupyter:

minian notebooks copy cross_registration
jupyter notebook minian-notebooks/cross_registration/cross-registration.ipynb

See Installation for installation and Command line interface for the full command reference.

The notebook fetches its two-session demo dataset automatically via minian.data.fetch() (cached and checksum-verified).

Using your own data

To run the cross-registration on your own data, edit the dpath and f_pattern cell near the top of the notebook: point dpath at a directory of saved minian datasets and set f_pattern to match them (for example r"minian$" for the default zarr output format).