Index A | C | D | E | F | G | I | K | L | M | N | O | P | R | S | T | U | V | X A adj_corr() (in module minian.cnmf) AlignViewer (class in minian.visualization) ANNOTATIONS (in module minian.utilities) apply_transform() (in module minian.motion_correction) C cal_mapping() (in module minian.cross_registration) calculate_centroid_distance() (in module minian.cross_registration) calculate_centroids() (in module minian.cross_registration) calculate_mapping() (in module minian.cross_registration) cartesian() (in module minian.cross_registration) centroid() (in module minian.visualization) check_key() (in module minian.utilities) check_pat() (in module minian.utilities) check_temp() (in module minian.motion_correction) CNMFViewer (class in minian.visualization) compute_AtC() (in module minian.cnmf) compute_trace() (in module minian.cnmf) construct_G() (in module minian.visualization) construct_pulse_response() (in module minian.visualization) convolve_G() (in module minian.visualization) custom_arr_optimize() (in module minian.utilities) custom_delay_optimize() (in module minian.utilities) custom_fused_keys_renamer() (in module minian.utilities) D da_label() (in module minian.initialization) datashade_ndcurve() (in module minian.visualization) denoise() (in module minian.preprocessing) E est_motion_chunk() (in module minian.motion_correction) est_motion_part() (in module minian.motion_correction) est_motion_perframe() (in module minian.motion_correction) estimate_motion() (in module minian.motion_correction) F factors() (in module minian.utilities) FAST_FUNCTIONS (in module minian.utilities) fill_mapping() (in module minian.cross_registration) filt_butter() (in module minian.cnmf) filt_fft() (in module minian.cnmf) filt_fft_vec() (in module minian.cnmf) G generate_videos() (in module minian.visualization) get_ar_coef() (in module minian.cnmf) get_bspline_param() (in module minian.motion_correction) get_chk() (in module minian.utilities) get_chunksize() (in module minian.utilities) get_keys_pat() (in module minian.utilities) get_mesh_size() (in module minian.motion_correction) get_noise_fft() (in module minian.cnmf) get_noise_welch() (in module minian.cnmf) get_optimal_chk() (in module minian.utilities) gmm_refine() (in module minian.initialization) graph_optimize_corr() (in module minian.cnmf) group_by_session() (in module minian.cross_registration) I idx_corr() (in module minian.cnmf) initA() (in module minian.initialization) initC() (in module minian.initialization) inline_pattern() (in module minian.utilities) intensity_refine() (in module minian.initialization) K ks_perseed() (in module minian.initialization) ks_refine() (in module minian.initialization) L label_connected() (in module minian.cnmf) local_extreme() (in module minian.utilities) local_max_roll() (in module minian.initialization) lstsq_vec() (in module minian.cnmf) M max_proj_frame() (in module minian.initialization) med_baseline() (in module minian.utilities) minian.cnmf module minian.cross_registration module minian.initialization module minian.motion_correction module minian.preprocessing module minian.utilities module minian.visualization module module minian.cnmf minian.cross_registration minian.initialization minian.motion_correction minian.preprocessing minian.utilities minian.visualization N NNsort() (in module minian.visualization) noise_fft() (in module minian.cnmf) noise_welch() (in module minian.cnmf) norm() (in module minian.visualization) normalize() (in module minian.visualization) O open_minian() (in module minian.utilities) open_minian_mf() (in module minian.utilities) optimize_chunk() (in module minian.utilities) P partition_diagnostics() (in module minian.cnmf) pd_dist() (in module minian.cross_registration) pnr_perseed() (in module minian.initialization) pnr_refine() (in module minian.initialization) ptp_q() (in module minian.initialization) R rechunk_like() (in module minian.utilities) remove_background() (in module minian.preprocessing) remove_background_perframe() (in module minian.preprocessing) resolve() (in module minian.cross_registration) resolve_mapping() (in module minian.cross_registration) rewrite_key() (in module minian.utilities) S save_minian() (in module minian.utilities) seeds_init() (in module minian.initialization) seeds_merge() (in module minian.initialization) show() (minian.visualization.AlignViewer method) (minian.visualization.CNMFViewer method) (minian.visualization.VArrayViewer method) smooth_corr() (in module minian.cnmf) smooth_sig() (in module minian.cnmf) spatial_partition() (in module minian.cnmf) split_key() (in module minian.utilities) sps_any() (in module minian.cnmf) subset_pairs() (in module minian.cross_registration) T TaskAnnotation (class in minian.utilities) transform_perframe() (in module minian.motion_correction) U unique_keys() (in module minian.utilities) unit_merge() (in module minian.cnmf) update_background() (in module minian.cnmf) update_graph() (minian.utilities.TaskAnnotation method) update_meta() (in module minian.utilities) update_spatial() (in module minian.cnmf) update_spatial_block() (in module minian.cnmf) update_spatial_perpx() (in module minian.cnmf) update_temporal() (in module minian.cnmf) update_temporal_block() (in module minian.cnmf) update_temporal_cvxpy() (in module minian.cnmf) V VArrayViewer (class in minian.visualization) visualize_gmm_fit() (in module minian.visualization) visualize_motion() (in module minian.visualization) visualize_preprocess() (in module minian.visualization) visualize_seeds() (in module minian.visualization) visualize_seeds_merge_partition() (in module minian.visualization) visualize_spatial_partition() (in module minian.visualization) visualize_spatial_update() (in module minian.visualization) visualize_temporal_update() (in module minian.visualization) X xrconcat_recursive() (in module minian.utilities)